Publications

  • Wylie DC, Hofmann HA and Zemelman BV. SArKS: Discovering gene expression regulatory motifs and domains by suffix array kernel smoothing. 2017 (Submitted, PLOS Computational Biology)
  • Miller DR, Medina FA, Hassan A, Perillo EP, Hagan K, Kazmi S, Zemelman BV and Dunn AK. In vivo multiphoton microscopy beyond 1 mm in the brain. 2017 (Submitted, Biomedical Optics Express)
  • Siegel J, Chitwood R, Ding J, Payne C, Taylor W, Gray R, Zemelman BV and Johnston D. Prefrontal cortex dysfunction in Fragile X mice depends on the continued absence of Fragile X Mental Retardation Protein in the adult brain. 2017 (In Press, J Neurosci.)
  • Zemelman BV. Uncovering Key Neurons for Manipulation in Mammals. In: Optogenetics: From Neuronal Function to Mapping and Disease Biology. Cambridge University Press. 2017.
  • Bernier BE, Lacagnina A, Ayoub A, Zemelman BV, Krasne FB and Drew MR. Dentate gyrus contributes to retrieval as well as encoding: Evidence from context fear conditioning, recall, and extinction. J Neurosci. 2017 doi: 10.1523/JNEUROSCI.3029-16.2017. [Epub ahead of print] PMID: 28546308
  • Wolfe SA, Workman ER, Heaney C, Niere F, Namjoshi S, Cacheaux L, Farris SP, Drew MR, Zemelman BV, Harris RA and Raab-Graham KF. FMRP regulates an ethanol-dependent shift in GABABR function and expression with rapid antidepressant properties. Nat Commun. 2016 Sep 26;7:12867. doi: 10.1038/ncomms12867. PMID: 27666021
  • Piant S, Specht A, Zemelman B, Losonczy A and Bolze F. Two-photon sensitive photolabile protecting groups: From molecular engineering to nanostructuration. Molecular Crystals and Liquid Crystals. 2016;627:56-65. doi: 10.1080/15421406.2015.1137119
  • Basu J, Zaremba JD, Cheung SK, Hitti FL, Zemelman BV, Losonczy A and Siegelbaum SA. Tuning hippocampal activity, sensory coding and learning behavior with entorhinal cortex long-range inhibition. Science. 2016;351(6269):1066. PMID: 26744409
  • Seidemann E, Chen Y, Bai Y, Chen SC, Mehta P, Kajs BL, Geisler WS and Zemelman BV. Calcium imaging with genetically encodedindicators in behaving primates. eLife. 2016 Jul 21;5. pii: e16178. doi: 10.7554/eLife.16178. PMID: 27441501
  • Scholl B, Pattadkal JJ, Dilly, GA, Priebe NJ and Zemelman BV. Local integration accounts for weak selectivity of mouse neocortical parvalbumin interneurons. Neuron. 2015;87(2):424-36. PMID: 26182423
  • Niere F, Namjoshi S, Song E, Dilly GA, Schoenhard G, Zemelman BV, Mechref Y and Raab-Graham KF. Analysis of proteins that rapidly change upon mTORC1 repression identifies PARK7 as a novel protein aberrantly expressed in Tuberous Sclerosis Complex. Mol Cell Proteomics 2015 (epub ahead of print) PMID 26419955
  • Milstein AD, Erik B. Bloss EB, Dilly GA, Zemelman BV and Magee JC. Inhibitory gating of input comparison in the CA1 microcircuit. Neuron. 2015;87(6):1274-89 PMID 26402609
  • Siegel J, Taylor W, Gray R, Kalmbach B, Zemelman BV, Desai N, Johnston D and Chitwood R. Trace eyeblink conditioning in mice is dependent upon the cerebellum and dorsal medial prefrontal cortex: behavioral characterization and functional circuitry. eNeuro. 2015;2(4) DOI: 10.1523/ENEURO.0051-14.2015. PMID: 26464998
  • Dembrow NC, Zemelman BV, Johnston D. Temporal Dynamics of L5 Dendrites in Medial Prefrontal Cortex Regulate Integration versus Coincidence Detection of Afferent Inputs. J Neuroscience. 2015;35(11):4501-14. PMID: 25788669
  • Workman ER, Haddick PCG, Zemelman BV, and Raab-Graham KF. Rapid Antidepressant Stimulates Decoupling of GABABR from GIRK/Kir3 through 14-3-3η. Molecular Psychiatry. 2015;20(3):298-310 PMID: 25560757
  • Dale F, Tillo S, Yang G, Rah JC, Melander J, Bai S, Soler-Cedeño O, Qin M, Zemelman BV, Guo C, Mao T and Zhong H. Live Imaging of Endogenous PSD-95 Using ENABLED: A Conditional Strategy to Fluorescently Label Endogenous Proteins. J Neuroscience. 2014;34(50):16698-712. PMID: 25505322
  • Piant S, Specht A, Zemelman BV, Losonczy A, and Bolze F. Two-photon sensitive photolabile protecting groups: From molecular engineering to nanostructuration. Biomedical Optics. 2014 DOI: 10.1364/BIOMED.2014.BT3A.33
  • Lovett-Barron M, Kaifosh P, Khierbek MA, Danielson N, Zaremba J,  Reardon TR, Turi GF, Hen R, Zemelman BV, and Losonczy A. Dendritic Inhibition in the Hippocampus Supports Fear Learning. Science. 2014;343:857-63. PMID: 24558155
  • Royer S, Zemelman BV, Losonczy A, Kim J, Chance F, Magee J and Buzsáki G. Control of timing, rate and firing patterns of hippocampal place cells by dendritic and perisomatic inhibition. Nature Neuroscience. 2012;15:769-775
  • Lovett-Barron M, Turi GF, Kaifosh P, Lee PH, Bolze F, Sun X-H, Nicoud J-F, Zemelman BV, Sternson SM and Losonczy A. Regulation of neuronal input output transformation by tunable dendritic inhibition. Nature Neuroscience. 2012;15:423-430
  • Borghuis BG, Tian L, Xu Y, Nikonov SS, Vardi N, Zemelman BV, Looger LL. Imaging light responses of targeted neuron populations in the rodent retina. J Neuroscience. 2011;31:2855-67
  • Kätzel D, Zemelman BV, Buetfering C, Wölfel M, Miesenböck G. The columnar and laminar organization of inhibitory connections to neocortical excitatory cells. Nature Neuroscience. 2011;14:100-7
  • Royer S, Zemelman BV, Losonczy A, Buzsáki G and Magee J. Optoelectronic neural interface (ONI): light-assisted perturbation of silicon probe-monitored local circuits in the behaving animal. Eur J Neurosci. 2010;31:2279-91.
  • Andrasfalvy B, Zemelman BV, Tang J and Vaziri A. Two-photon optogenetic control of neural activity with single cell resolution by sculpted light. Proc Natl Acad Sci U S A. 2010;107:11981-6.
  • Losonczy A*, Zemelman BV*, Vaziri A and Magee J. Network mechanisms of theta-related neuronal activity in hippocampal CA1 pyramidal neurons. Nature Neuroscience. 2010;13:967-72.
  • Varga V*, Losonczy A*, Zemelman BV*, Borhegyi Z, Nyiri G, Domonkos A, Hangya B, Holderith N, Magee J and Freund T. Fast synaptic activation of hippocampal circuits by subcortical serotonergic and glutamatergic inputs. Science. 2009;326:449-53.
  • Zemelman BV, Nesnas N, Lee GA, Miesenböck G. Photochemical gating of heterologous ion channels: Remote control over genetically designated populations of neurons. Proc Natl Acad Sci U S A. 2003;100:1352-7.
  • Ng M, Roorda RD, Lima SQ, Zemelman BV, Morcillo P, Miesenböck G. Transmission of olfactory information between three populations of neurons in the antennal lobe of the fly. Neuron. 2002;36:463-74.
  • Huang KJ, Zemelman BV, Lehman IR. Endonuclease G, a candidate human enzyme for the initiation of genomic inversion in herpes simplex type 1 virus. J Biol Chem. 2002;277:21071-9.
  • Zemelman BV, Lee GA, Ng M, Miesenböck G. Selective photostimulation of genetically chARGed neurons. Neuron. 2002;33:15-22.
  • Zemelman BV, Miesenböck G. Genetic schemes and schemata in neurophysiology. Curr Opin Neurobiol. 2001;11:409-14.
  • De Angelis DA, Miesenböck G, Zemelman BV, Rothman JE. PRIM: Proximity imaging of green fluorescent protein-tagged polypeptides. Proc Natl Acad Sci U S A. 1998;95:12312-16.
  • McNew JA, Coe JG, Sogaard M, Zemelman BV, Wimmer C, Hong W, Sollner TH. Gos1p, a Saccharomyces cerevisiae SNARE protein involved in Golgi transport. FEBS Lett. 1998;435:89-95.
  • Weber T, Zemelman BV*, McNew JA*, Westermann B, Gmachl M, Parlati F, Sollner TH, Rothman JE. SNAREpins: minimal machinery for membrane fusion. Cell. 1998;92:759-772.
  • Dutch RE, Zemelman BV, Lehman IR. Herpes simplex virus type 1 recombination: the Uc-DR1 region is responsible for the recombinogenic nature of the viral a sequences. J Virology. 1994;68:3733-3741.
  • Bruckner RC, Dutch RE, Zemelman BV, Mocarski ES, Lehman IR. Recombination In vitro between herpes simplex virus type 1 a sequences. Proc Natl Acad Sci U S A. 1992;89:10950-10954.
  • Brook JD, McCurrach ME, Harley HG, Buckler AJ, Church D, Aburatani H, Hunter K, Stanton VP, Thirion JP, Hudson T, Sohn R, Zemelman BV, Snell RG, Rundle SA, Crow S, Davies J, Shelbourne P, Jones C, Juvonen V, Johnson K, Harper PS, Shaw DJ, Housman DE. Molecular basis of myotonic dystrophy: expansion of a trinucleotide (CTG) repeat at the 3′ end of a transcript encoding a protein kinase family member. Cell. 1992; 68:799-808.
  • Brook JD, Zemelman BV, Hadingham K, Siciliano MJ, Crow S, Harley HG, Rundle SA, Buxton J, Johnson K, Almond JW, Housman DE, Shaw DJ. Radiation-reduced hybrids for the myotonic dystrophy locus. Genomics. 1992;13:243-50.
  • Zemelman BV, Walker WA, Chu SH. Expression and developmental regulation of Na+,K+ adenosine triphosphatase in the rat small intestine. J Clin Invest. 1992;90:1016-22.
  • Zemelman BV, Chu SH, Walker WA. Host response to Escherichia coli heat-labile enterotoxin via two microvillus membrane receptors in the rat intestine. Infect Immun. 1989;57:2947-52.